PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016469221.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 75aa    MW: 8678.48 Da    PI: 4.0183
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016469221.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.2e-122867344
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                      ++++E+el+++  ++lG + W++Ia +++ gRt++++  +w
   XP_016469221.1 28 EFSEDEEELIIRMYNLLGER-WSLIAGRIP-GRTAEEIEKYW 67
                     69******************.*********.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.3112175IPR017930Myb domain
SMARTSM007172.9E-92573IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-92768IPR009057Homeodomain-like
PfamPF002493.7E-112867IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-152869IPR009057Homeodomain-like
CDDcd001676.17E-63667No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MADSEQLSFS DYTPPDSQGK ISKEVETEFS EDEEELIIRM YNLLGERWSL IAGRIPGRTA  60
EEIEKYWDTR SSTSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800523.12e-48PREDICTED: MYB-like transcription factor ETC1
RefseqXP_016469221.12e-48PREDICTED: MYB-like transcription factor ETC1
SwissprotQ9LNI56e-17ETC1_ARATH; MYB-like transcription factor ETC1
TrEMBLM1C8629e-34M1C862_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000618643e-33(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65791932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01380.16e-16MYB_related family protein